genewise output
Score 254.61 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000620_2.0    1 RKTKDFYSYEVKDARGRTVSLEKYRGK                       
                     RK KDFY++EVKDA+GR VSLEKYRGK                       
                     RKPKDFYAFEVKDAKGRMVSLEKYRGK                       
OMLM01014511.1: 4706 aacagttgtggaggagaagtcgatcgaGTAAGTC  Intron 1      
                     gacaatactataacaggttctaaagga<0-----[4787 : 4940]   
                     gaggtttgtgcacgggggttgggcaaa                       


SPP00000620_2.0   28    VSLVVNVASGSELTEQSYRALQELHRELGTSHFNVLAFPCSQYGDT 
                         SLVVNVAS SE TE +YR+LQELH+ELGTSHFNVLAFPC QYGDT 
                        ASLVVNVASHSEQTEANYRSLQELHKELGTSHFNVLAFPCGQYGDT 
OMLM01014511.1: 4938 CAGgttggaggacagcaggatatccgccagcgatctagcgtctgctgga 
                     -0>cctttatcgagaacacaagctaataaatgccatattctcggaagac 
                        gtgtacggtccgggggccgtgggccgggtctccccgtccttgcgca 


SPP00000620_2.0   74 ESGTSREIEAFAKSNYGVTFPIFNKIKIMGSEAEPAFRFLT         
                     E+G SR+IEAFAKS YGVTFP+F+KIKIMGSE +PAF+FLT         
                     ETGNSRDIEAFAKSTYGVTFPFFSKIKIMGSEVDPAFKFLT         
OMLM01014511.1: 5079 gagaacgaggtgatatggatcttaaaaaagtgggcgtatca         
                     acgaggatactcaccagtctcttgatattgcatacctattc         
                     acgccgccgtccacccttccctccgcaagcaggctccacca         


SPP00000620_2.0  115                           ----GRKWNFWKFLVSPEGQVVR 
                                                     KWNFWKFLV+PEG+VVR 
                               -:D[gat]        SVQKTPKWNFWKFLVNPEGKVVR 
OMLM01014511.1: 5202 GGTTGGTA  Intron 2   CAGATtgcaacatattatcgacggaggc 
                      <1-----[5203 : 6389]-1>  ctaaccagatgatttacagattg 
                                               cggataggccggtggtgggggtc 


SPP00000620_2.0  134 FWKPEEPVSDIRKEATTLVR                              
                     FW+ +EP+  IR E   +VR                              
                     FWRTDEPIESIRHEVVAMVR                              
OMLM01014511.1: 6461 ttaaggcagaaacggggagc                              
                     tggcaactagtgaattcttg                              
                     cgaatgctgctatgcgggga                              


//
Making a D in phase 1 intron
>OMLM01014511.1:subseq(0,56520).pep
RKPKDFYAFEVKDAKGRMVSLEKYRGKASLVVNVASHSEQTEANYRSLQELHKELGTSHF
NVLAFPCGQYGDTETGNSRDIEAFAKSTYGVTFPFFSKIKIMGSEVDPAFKFLTDSVQKT
PKWNFWKFLVNPEGKVVRFWRTDEPIESIRHEVVAMVR
//
>OMLM01014511.1:subseq(0,56520).[4706:6520].sp
AGGAAACCGAAGGATTTTTATGCGTTTGAGGTCAAAGACGCGAAGGGGAGGATGGTTTCT
CTGGAGAAGTACCGAGGAAAAGCGTCTTTGGTTGTAAACGTGGCGAGTCACAGCGAGCAG
ACGGAGGCGAACTACAGGTCTCTGCAGGAGCTCCACAAGGAGCTGGGTACCTCTCACTTC
AACGTCCTGGCTTTCCCCTGTGGTCAGTACGGGGACACAGAAACCGGGAACAGCCGGGAC
ATCGAGGCTTTCGCCAAATCCACCTACGGTGTTACCTTCCCCTTTTTCAGCAAGATCAAA
ATAATGGGCTCAGAGGTGGACCCTGCCTTCAAATTCCTCACAGATTCCGTGCAGAAAACT
CCAAAGTGGAACTTCTGGAAGTTTCTGGTGAATCCGGAGGGGAAGGTGGTTCGCTTCTGG
AGAACAGATGAGCCCATTGAGAGCATTAGACATGAGGTCGTGGCGATGGTGCGA
//
OMLM01014511.1:subseq(0,56520)	GeneWise	match	4706	6520	257.61	+	.	OMLM01014511.1:subseq(0,56520)-genewise-prediction-1
OMLM01014511.1:subseq(0,56520)	GeneWise	cds	4706	4786	0.00	+	0	OMLM01014511.1:subseq(0,56520)-genewise-prediction-1
OMLM01014511.1:subseq(0,56520)	GeneWise	intron	4787	4940	0.00	+	.	OMLM01014511.1:subseq(0,56520)-genewise-prediction-1
OMLM01014511.1:subseq(0,56520)	GeneWise	cds	4941	5202	0.00	+	0	OMLM01014511.1:subseq(0,56520)-genewise-prediction-1
OMLM01014511.1:subseq(0,56520)	GeneWise	intron	5203	6389	0.00	+	.	OMLM01014511.1:subseq(0,56520)-genewise-prediction-1
OMLM01014511.1:subseq(0,56520)	GeneWise	cds	6390	6520	0.00	+	2	OMLM01014511.1:subseq(0,56520)-genewise-prediction-1
//